PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 886281
Common NameARALYDRAFT_685725
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 451aa    MW: 50207.6 Da    PI: 9.5001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
886281genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-057294123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             + C++C+k F r  nL+ H r H
   886281 72 FFCEICNKGFQREQNLQLHKRGH 94
             67******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.5E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8037294IPR007087Zinc finger, C2H2
SMARTSM003550.0097294IPR015880Zinc finger, C2H2-like
PfamPF121715.0E-67294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355120114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.87E-7144169No hitNo description
SMARTSM00355260149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMIPHNHDRL SFSSFVHDQE ENITINPSPK SQPPASTNTP KKKRNLPGNP GMYPNAEVIA  60
LSPKSLMATN RFFCEICNKG FQREQNLQLH KRGHNLPWKL KQKTNKNQVK KKVYICPEKS  120
CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV ISDWKAHNKI CGSREFRCDC  180
GTLFSRKESF ISHRSFCDVL AKESAKFFSV PSPLAANSTI ATVADINNPI LIQSQLDQSS  240
IGNVNNNHTS LKFTNSNPIQ QQANAFALSS APSPVTTSDS VHNLWKLQEE ECSHQWLLNE  300
YMNNDKNIIQ KGIFKNQEDE IKKGNIYSGS NPTDANTASW LSYSQEAGNM ASLSATTLLH  360
KVAQMGSSSS SDTSTMFGLM TSSIFNNTLP KSNCFKANNK EEELTRDFLG VGSPDDQQQL  420
HHHHFPSSVP LTVNHNAPKL AATIVGKEAT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864687.10.0predicted protein
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLD7MTU80.0D7MTU8_ARALL; Predicted protein
STRINGAl_scaffold_0008_25450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein